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From-scratch long-fermented sourdough apple and carrot muffins on a tray.

Sourdough Apple Carrot Muffins (Overnight Long-Fermented Recipe!)

These long-fermented sourdough apple carrot muffins are packed with freshly grated carrots and honeycrisp apples, sweetened with honey, and just the right amount of cinnamon for a nutritious and delicious breakfast option!
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Course: Breakfast
Cuisine: American
Prep Time: 10 minutes
Cook Time: 20 minutes
Overnight Fermentation: 12 hours
Total Time: 12 hours 30 minutes
Servings: 16 muffins
Author: Jamie

Ingredients

Overnight Ferment

  • 2 cups all-purpose flour 240 grams
  • 1/2 cup active sourdough starter 120 grams
  • 1 cup whole milk cold milk, 240 grams

Muffin Batter

  • 1 medium apple shredded and patted dry, 130 grams
  • 1 large carrot shredded and patted dry, 100 grams
  • 1/2 cup butter melted, 113 grams
  • 1 cup honey 340 grams
  • 2 large eggs
  • 1/2 cup full-fat Greek yogurt 120 grams
  • 1 teaspoon vanilla extract 5 grams
  • 2 teaspoons ground cinnamon 5 grams
  • 2 teaspoons baking powder 8 grams
  • 1 teaspoon baking soda 5 grams
  • 1/4 teaspoon salt

Instructions

The Night Before

  • In a large mixing bowl, combine the flour, active sourdough starter, and whole milk.
  • Mix until fully combined and no dry flour remains.
  • Cover the bowl and let the mixture rest at room temperature for 8–12 hours.

The Next Morning

  • Preheat the oven to 425°F.
  • Line two muffin tins with muffin liners and set aside.
  • Shred the apple and carrot, then gently pat dry with a paper towel to remove excess moisture.
  • Add the shredded apple and carrot to the fermented dough.
  • In a separate bowl, whisk together the melted butter, honey, eggs, Greek yogurt, vanilla extract, and cinnamon.
  • Pour the wet ingredients into the fermented dough.
  • Using an electric hand mixer or stand mixer, mix until fully combined. The batter will be thick at first but will come together smoothly.
  • Mix in the baking powder, baking soda, and salt until just incorporated.
  • Divide the batter evenly among the prepared muffin liners.
  • Bake at 425°F for 10 minutes, then—without opening the oven door—reduce the oven temperature to 350°F.
  • Continue baking for an additional 10 minutes, or until the muffins are set and a toothpick inserted into the center comes out clean.
  • Remove from the oven and allow to cool slightly before serving.

Notes

Storage:
  • Room Temperature: Store cooled muffins in an airtight container at room temperature for up to 2 days.
  • Freezer: Once completely cooled, freeze muffins in a freezer-safe bag or container for up to 3 months. Thaw at room temperature or warm gently before serving.

Nutrition

Serving: 1muffin | Calories: 209kcal | Carbohydrates: 34g | Protein: 4g | Fat: 7g | Saturated Fat: 4g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 2g | Trans Fat: 0.2g | Cholesterol: 38mg | Sodium: 187mg | Potassium: 97mg | Fiber: 1g | Sugar: 20g | Vitamin A: 991IU | Vitamin C: 1mg | Calcium: 68mg | Iron: 1mg
Calories: 209kcal
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